Tree-rings,a key ecological indicator of environment and climate change

Due to wide spatial distribution, high annual resolution, calendar-exact dating, and high climate sensitivity, tree-rings play an important role in reconstructing past environment and climate change over the past millennium at regional, hemispheric or even global scales, so tree-rings can help us to better understand climate behaviour and its mechanisms in the past and then predict variation trends for the future. In this paper, we will review latest advances in tree-ring-based climate reconstructions in China and their applications in modelling past local/regional climate change, capturing historical climatic extreme events, as well as analyzing their link to large-scale climate patterns.     

Field Hypothesis on the Self-regulation of Gene Expression

The mechanism of the self-regulation of gene expression in living cells is generally explained by considering complicated networks of key-lock relationships, and in fact there is a large body of evidence on a hugenumber of key-lock relationships. However, in the present article we stress that with the network hypothesis alone it is impossible to fully explain the mechanism of self-regulation in life. Recently, it has been established that individual giant DNA molecules, larger than several tens of kilo base pairs, undergo a large discrete transition in their higher-order structure. It has become clear that nonspecific weak interactions with various chemicals, suchas polyamines, small salts, ATP and RNA, cause on/off switching in the higher-order structure of DNA. Thus, the field parameters of the cellular environment should play important roles in the mechanism of self-regulation, in addition to networks of key and locks. This conformational transition induced by field parameters may be related to rigid on/off regulation, whereas key-lock relationships may be involved in a more flexible control of gene expression.     

DNA replication stress: Causes,resolution and disease

DNA replication is a fundamental process of the cell that ensures accurate duplication of the genetic information and subsequent transfer to daughter cells. Various pertubations, originating from endogenous or exogenous sources, can interfere with proper progression and completion of the replication process, thus threatening genome integrity. Coordinated regulation of replication and the DNA damage response is therefore fundamental to counteract these challenges and ensure accurate synthesis of the genetic material under conditions of replication stress. In this review, we summarize the main sources of replication stress and the DNA damage signaling pathways that are activated in order to preserve genome integrity during DNA replication. We also discuss the association of replication stress and DNA damage in human disease and future perspectives in the field.     

Effect of temperature on woodwasp (Sirex noctilio F.) development and parasitism by the entomopathogenic nematode,Deladenus siricidicola

The woodwasp, Sirex noctilio, is a significant global pest of exotic pine plantations in the Southern Hemisphere and now threatens native pine forests in North America. Management in Australia relies on biocontrol using the nematode, Deladenus (= Beddingia) siricidicola (Bedding), which infects and sterilises females who then further disperse the nematode. This pest is spreading into warmer regions in Australia and South America and coupled with the threat of global climate change, there is uncertainty as to how increasing temperatures will affect the biocontrol program. S. noctilio within nematode-inoculated wood were reared at four temperatures (24, 25.3, 26.6 and 28 °C) to investigate the effects of elevated temperatures on wasp development (emergence time, sex ratio and size), development of eggs (number, size, and maturation) and infection by the nematode. At 24 °C, which reflects current field temperature, S. noctilio were bigger in size and all the eggs were normal and all were infected with nematodes. Modest rises in temperature reflecting climate change scenarios resulted in smaller sized S. noctilio, disrupted egg development and maturation, and lowered the nematode sterilisation rate in females. Reduced S. noctilio female body size and egg infection will likely compromise biocontrol by D. siricidicola in its current distribution, but disrupted egg development may act directly on the pest, limiting dispersal of S. noctilio into subtropical pine plantations and adaptation to climate change.     

Growth response of Abies georgei to climate increases with elevation in the central Hengduan Mountains,southwestern China

Climatic harshness is expected to increase at higher elevations; however, elevational trends of tree radial growth response of high-elevation forests to climate change need to be investigated at different locations because of existing local variability in site-specific climatic conditions. We developed tree-ring width chronologies of Yunnan fir (Abies georgei) along elevation gradients at two sites in the central Hengduan Mountains (HM). High-elevation forests of A. georgei showed growth synchronicity and common growth signals along elevation gradients, indicating a common climatic forcing, although tree radial growth rates decreased with increasing elevation. Radial growth of Yunnan fir showed positive correlations with summer temperatures and February precipitation and moisture availability, but were negatively correlated with spring temperatures. The strongest positive relationship indicated summer (July) mean and minimum temperatures are the most important growth determining climatic factors for tree radial growth in the cold environment of HM, and this relationship revealed a clear elevational trend with stronger correlations at higher altitudes. In contrast, tree radial growth was negatively correlated with June precipitation and moisture availability. The whole study period 1954–2015 was split in two sub-periods of equal length. Comparing the early sub-period (1954–1984) to the later sub-period (1985–2015), tree growth response to the summer temperatures strongly increased, while it became weaker to June precipitation and moisture availability. High-elevation Yunnan fir forests in the HM currently benefit from elevated growing season temperatures under humid summer conditions. However, increasing temperatures may induce drought stress on tree radial growth if the observed decreasing trend in humidity and precipitation continues.     

VS-oscilloscope: A new tool to parameterize tree radial growth based on climate conditions

It is generally assumed in dendroecological studies that annual tree-ring growth is adequately determined by a linear function of local or regional precipitation and temperature with a set of coefficients that are temporally invariant. However, various researchers have maintained that tree-ring records are the result of multivariate, often nonlinear biological and physical processes. To describe critical processes linking climate variables with tree-ring formation, the process-based tree-ring Vaganov–Shashkin model (VS-model) was successfully used. However, the VS-model is a complex tool requiring a considerable number of model parameters that should be re-estimated for each forest stand. Here we present a new visual approach of process-based tree-ring model parameterization (the so-called VS-oscilloscope) which allows the simulation of tree-ring growth and can be easily used by researchers and students. The VS-oscilloscope was tested on tree-ring data for two species (Larix gmeliniiand Picea obovata) growing in the permafrost zone of Central Siberia. The parameterization of the VS-model provided highly significant positive correlations (p < 0.0001) between simulated growth curves and original tree-ring chronologies for the period 1950–2009. The model outputs have shown differences in seasonal tree-ring growth between species that were well supported by the field observations. To better understand seasonal tree-ring growth and to verify the VS-model findings, a multi-year natural field study is needed, including seasonal observation of the thermo-hydrological regime of the soil, duration and rate of tracheid development, as well as measurements of their anatomical features.